Stefan Lorkowski, Paul M. Cullen's Analysing Gene Expression: A Handbook of Methods PDF

By Stefan Lorkowski, Paul M. Cullen

ISBN-10: 3527304886

ISBN-13: 9783527304882

This ebook combines the adventure of 225 specialists on 900 pages. Scientists all over the world are presently beaten via the ever-increasing quantity and variety of genome initiatives. This instruction manual is your consultant in the course of the jungle of latest equipment and strategies to be had to examine gene expression - the 1st to supply one of these extensive view of the size of mRNA and protein expression in vitro, in situ or even in vivo. regardless of this vast procedure, element is enough so you might seize the foundations in the back of each one technique. In each one case, the authors weigh up the benefits and downsides, paying specific awareness to the automatic, high-throughput processing demanded via the biotech undefined. thoroughly brand new, the e-book covers such ground-breaking tools similar to DNA microarrays, serial research of gene expression, differential demonstrate, and identity of open examining body expressed series tags. all of the equipment and valuable apparatus are awarded visually in additional than three hundred mostly color illustrations to aid their step by step copy on your laboratory. every one bankruptcy is rounded off with its personal set of intensive references that offer entry to exact experimental protocols. briefly, the bible of analysing gene expression.

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Additional resources for Analysing Gene Expression: A Handbook of Methods Possibilities and Pitfalls

Example text

Among these subunits, one finds the two large subunits that are the hallmark of all multi-subunit RNA polymerases, including the eubacterial and archaebacterial ones, and which form the catalytic site of the protein. (iii) The other subunits are specific to each RNA polymerase class and may or may not be conserved through evolution. Some of these subunits interact with the basal transcription factors during initiation complex formation and are thus responsible for the determination of class specificity of transcription.

Genes that belong to a common pathway are often regulated in a similar way. Thus similarities in expression patterns may be used to assign function to unknown genes. Many studies using DNA microarrays were performed in the Saccharomyces cerevisiae model system. This organism was used since it was the first eukaryotic genome to be sequenced, it is highly amenable to genetic analysis. Two typical examples of the use of transcriptome analysis to investigate cell function were the analysis of the cell cycle-regulated genes and of the transcriptional response of the yeast to various stresses.

They are then separated in the second dimension by their apparent molecular mass. With the recent developments of mass spectrometry together with the advent of the sequence of genomes, it has been possible to devise methods that allow identification of hundreds of proteins on two-dimensional gels (Pandey & Mann, 2000). These methods are also able to detect some protein modifications (see chapter 5). Although proteome analysis using two-dimensional gels can at best reveal the 500 to 1,000 most abundant proteins present within a sample, there are many situations where it cannot be replaced by transcriptome analysis.

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Analysing Gene Expression: A Handbook of Methods Possibilities and Pitfalls by Stefan Lorkowski, Paul M. Cullen

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